rs212190885 SNP Detail

Summary

• ID
  rs212190885
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCGGTTCG AGGTGGCAGC
  CGAAAGTGGT TATCTTCCTC CACCTCTTAC CGTCTCTGGA AAAATTAAAA AGAAAGAAAG
  AAAGAAAAAA ACACACCCGA AAACACCAAC CAAAGTGCTT AGTGAATCAG AATGGGTCAC
  TTATGGAGGC TAAGAGCAGC TGGGGCAGCA AGATCTGTCC CCGCGGTGCG CAAACCGCGG
  M
  CTCTGGGGCG ATGGCGGCCG GGTCAGGCCA CCCCAGAGCG GCCAGGCGGG GCTGCTCACC
  GGCAGCTGGC AGGGCGGCCG CGGCGGGAGG CCCCACGGGG GCGAGAGGCC CCGCGACGTC
  GGCACTGGGC GGGGGGAGGG TGGCAACACT GGGAGCGGGG AGCACGGGGG CAGGTGGTGG
  CGCTGCGGGG GGGGGGGCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433251	MGP_WTSI_3_30993033	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212190885					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433251	MGP_WTSI_3_30993033	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	110 bp downstream
Rr397631	regulatory region 397631	294 bp downstream
Rr574879	regulatory region 574879	204 bp distal
Rr574880	regulatory region 574880	166 bp proximal
Rr574881	regulatory region 574881	457 bp proximal
Rr574882	regulatory region 574882	1025 bp proximal
Rr574883	regulatory region 574883	1056 bp proximal
Rr574884	regulatory region 574884	1720 bp proximal
Skil	SKI-like	999 bp upstream
Tssr28706	transcription start site region 28706	204 bp downstream
Tssr28707	transcription start site region 28707	61 bp downstream
Tssr28708	transcription start site region 28708	555 bp upstream
Tssr28709	transcription start site region 28709	583 bp upstream
Tssr28710	transcription start site region 28710	608 bp upstream
Tssr28711	transcription start site region 28711	826 bp upstream
Tssr28712	transcription start site region 28712	850 bp upstream
Tssr28713	transcription start site region 28713	941 bp upstream
Tssr28714	transcription start site region 28714	1786 bp upstream
Tssr32911	transcription start site region 32911	1716 bp downstream