rs212191197 SNP Detail

Summary

• ID
  rs212191197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30066449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCCCTT TCAAAAAAAA
  AAAAAAATAG AATAAATACC CAAACGAAAA GGGGGGAAAA TCCCAGACTG TAAGCCAAAA
  GTCCGAATGT GACTTTCTCA AGGCAACACA CGCAGTTGGC CAGTGAAGCT GTTACTTGGC
  AAGGTGAGAC TCCACCGAAA GCCACTTCCA AAGTCGCTTG GCTGGTGCCA GGAATTCTGA
  Y
  TTTTGGCAAC CCCACCTTCT GCGTCCCCGA ACCTGACCGA CTGAACGTAG GAGGGAGGGG
  AAGGAGGACG CGAGAGCCGA GAAGGCGGCA GCCAGCCGGG CTGACCCACC CGAGGCGGCG
  GAGTCCCAGC GACCAGGGAC GCTCCGGGGG CACGGGGACC TCAGCGCAAA CCCGGGACGC
  AGACGCTGTC CCCAGCGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357407758	MGP_WTSI_3_29911222	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212191197					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357407758	MGP_WTSI_3_29911222	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30066449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13032	CpG island 13032	within coordinates
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	1139 bp proximal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	1310 bp proximal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	1033 bp proximal
Mecom	MDS1 and EVI1 complex locus	within coordinates
Rr77476	regulatory region 77476	within coordinates
Tssr28678	transcription start site region 28678	91 bp downstream
Tssr32873	transcription start site region 32873	586 bp downstream
Tssr32874	transcription start site region 32874	704 bp downstream
Tssr32875	transcription start site region 32875	725 bp downstream
Tssr32876	transcription start site region 32876	836 bp downstream
Tssr32877	transcription start site region 32877	857 bp downstream
Tssr32878	transcription start site region 32878	932 bp downstream
Tssr32879	transcription start site region 32879	947 bp downstream
Tssr32880	transcription start site region 32880	1027 bp downstream
Tssr32881	transcription start site region 32881	1049 bp downstream
Tssr32882	transcription start site region 32882	1088 bp downstream