rs212196376 SNP Detail

Summary

• ID
  rs212196376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:80367643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAAACCC ATCCTATATT
  TGAAGACTAG CTGCTAAAGT AGTTGGATTA AAAAAGTTTC ACATTACTGC TCCAGTTTGT
  ATTTCATACC ATTTACAGTT TGCTTTCCTT TGGCTTAATC TGGAGTTTTT ATGGTTTTGT
  CCCCTCCCGC CCGCCCCCTT TTGTGAGCTA ACTAGCTTTT AAGATTTCTG TTTTAGAATC
  M
  CCAGGCTATG TATTTTTCAG AGTATGTAAA TATGGAACAC TTTGCACTTA TGACAGGTAT
  GTCCATTGAA ACATTCTTTG ATGCTTCCCA AACCATCCTA CCATTTGATA TCTCTTATTT
  TCAGAAATGT AGGAAGCTCC AGTGTGGGTG CTGTTTCCAG CCCAGTCTTT ACTGTTACAT
  AGGTAAACAG TCTGCTCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375288945	MGP_WTSI_8_82164913	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212196376					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375288945	MGP_WTSI_8_82164913	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:80367643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20624	CpG island 20624	575 bp distal
Gm51579	predicted gene, 51579	1109 bp upstream
Otud4	OTU domain containing 4	within coordinates
Rr400987	regulatory region 400987	1531 bp downstream
Rr665883	regulatory region 665883	1300 bp distal
Tssr78137	transcription start site region 78137	1616 bp downstream
Tssr78138	transcription start site region 78138	1590 bp downstream
Tssr78139	transcription start site region 78139	1543 bp downstream
Tssr78140	transcription start site region 78140	1495 bp downstream
Tssr78141	transcription start site region 78141	1284 bp downstream
Tssr78142	transcription start site region 78142	1234 bp downstream
Tssr78143	transcription start site region 78143	827 bp downstream
Tssr78144	transcription start site region 78144	796 bp downstream
Tssr78145	transcription start site region 78145	773 bp downstream