rs212198509 SNP Detail

Summary

• ID
  rs212198509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45202078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCCAACT TTAGTTTTGT
  TCCAAGACCA TTTCAACGGG TCTGCTGAGT GAAGGTTACT TTTCCAACAG CACCAATGAA
  CTATTTGCCC TTTTAACCCT CAATCTTTTG CTAGTGTGCT GTGGAGTTGA CCATAAACTC
  TGGCAGGTGG TCTTCACAAC ACTGACAGCT CCACGTACTT ATATATTTCC CTTTTAAAGT
  Y
  TATGTTTTCC TCTCAGATAT GGTAGCTATC AAGATACAGA GTTAATTTCA CATAGAAATT
  CTTTGTGGGC CTCAGTAATG TCTTTGAATG ATGAGAGGAG TGAGTCCTGA GAACACATGT
  TGGAGAAGTA TTTCTTTCAT TCCTCTTGCC TGACACAGCA GGGATTCAGC CGAGGTACCA
  GAGACACAGC AAGACAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396132289	MGP_WTSI_16_45381828	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212198509					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396132289	MGP_WTSI_16_45381828	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45202078 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	420 bp downstream
Tssr4884	transcription start site region 4884	975 bp downstream
Tssr4885	transcription start site region 4885	1012 bp downstream
Tssr4886	transcription start site region 4886	1344 bp downstream
Tssr141220	transcription start site region 141220	884 bp downstream
Tssr141221	transcription start site region 141221	907 bp downstream
Tssr141222	transcription start site region 141222	1028 bp downstream
Tssr141223	transcription start site region 141223	1041 bp downstream
Tssr141224	transcription start site region 141224	1060 bp downstream
Tssr141225	transcription start site region 141225	1084 bp downstream
Tssr141226	transcription start site region 141226	1136 bp downstream
Tssr141227	transcription start site region 141227	1190 bp downstream
Tssr141228	transcription start site region 141228	1232 bp downstream
Tssr141229	transcription start site region 141229	1248 bp downstream
Tssr141230	transcription start site region 141230	1401 bp downstream
Tssr141231	transcription start site region 141231	1495 bp downstream
Tssr141232	transcription start site region 141232	1547 bp downstream