rs212200979 SNP Detail

Summary

• ID
  rs212200979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110976757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTGCT TGTTACTCCC
  TTCTGGAAGA CCAGTGTTGC TCTCAGAACT TCACTGTCCC TTGATTTGTT GCTGTCTGGA
  ATCAAAGGAG CATGATTATG CTAAAGGGTT CATTTTGTCT AGGTGTGACA GATCCTTCAA
  GCCCAGCTGT TGCTGGTATG GCCCCCGCCC AGCCCCCCAG CACGTCTATA GTACTCAGAG
  Y
  CTCCTTTGGG TAGATTGCAT CATTGCAGAC CCTACGTTTT GCTTTTCTTG GGCTATTTAT
  TAGTTTGTAA TCAGATCTCA GTAATTAATC TTCTTAACCT TTGATTTCCT TTTTTATTTG
  GTAAGATTGT TTTTGCTGTC AAAGGTCTCT GCGTAAAAAA GAAGATAGAG TTTTTGACAA
  TTATGAAAAG AAGAGTTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195929	CHEV_9_111050193	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212200979					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110976757 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687308	regulatory region 687308	1391 bp proximal
Tssr87483	transcription start site region 87483	965 bp downstream
Tssr87484	transcription start site region 87484	344 bp upstream