rs212228668 SNP Detail

Summary

• ID
  rs212228668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151335654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCAAAAAG CTAAATTTGG TGGTGGGGTG
  TATTTTTACT TTAGTTTTTT GGTTTGtttt ctgtttttga gacagggtct gactatagct
  ctgactgacc tggaattcac tatgtagact aggctggcct cATGATATAT CATGGGTTAT
  R
  AGGTAGGGTT TATGAATTTG TCACAGAGTA ACTAAACCTT TTAGTGAGGT ATTAAAAGGG
  TCACCAGCCA AGGCAGCAAG CATAAGTAAG GGGCTCCTTG AGTTTGTGCT CATTCATTCA
  CCAAGTTTGA AAATTCCCAA TGCTGCTCTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320056663	CHEV_1_153307033	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212228668					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151335654 () rs orientation: forward

Symbol	Name	Function Class
Rr372239	regulatory region 372239	104 bp upstream
Rr420294	regulatory region 420294	1543 bp proximal
Trmt1l	tRNA methyltransferase 1 like	1742 bp downstream