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rs212244582 SNP Detail
Summary
  • ID
    rs212244582
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr13:46655736 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGCTGCGGG CGACTCTCCC
    CGAGAGCAGC GTGACCGACT CGGGCTCCCG TGCAGGGGGG AGGCGGAGGC AGCACCGGGC
    CTGCGGGAGG AGGGCGCAAG TGGCCGGAGC CGGCTTTGCA TCACCGAAGC CAGGACCTGA
    GCTCTACAGC AGGTCAGGCT GGAACGCGGA GGGGGACGGG GGGGGGGGGG GCGGCGAGGA
    R
    AATGGGGGGC TTGCCTGGAC ACCCGGCACC CAAGGCCGGC GCTCTCAAGT TGCGCGCCCC
    TGGTAGGGTG GGAGATGGCC AGGGCGCGGG GAAGAAAGGC GAAGCAGACT CAGGGATCTG
    AGGCCACCCA GATGTGAGGA CAAGGGAAGT GAGGACCGGA GATGTGAGGA TCTGTGATGC
    GGGGATCTGA CACTGGGGCA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss388503914 MGP_WTSI_13_46597629 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs212244582 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss388503914 MGP_WTSI_13_46597629 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:46655736 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cap2 cyclase associated actin cytoskeleton regulatory protein 2 within coordinates
Cpgi5539 CpG island 5539 within coordinates
Gm35110 predicted gene, 35110 335 bp upstream
Gm61509 predicted gene, 61509 635 bp upstream
Rr478915 regulatory region 478915 402 bp distal
Rr478916 regulatory region 478916 301 bp distal
Rr478917 regulatory region 478917 84 bp distal
Rr478918 regulatory region 478918 145 bp proximal
Rr478919 regulatory region 478919 656 bp proximal
Tssr119597 transcription start site region 119597 375 bp downstream
Tssr119598 transcription start site region 119598 344 bp downstream
Tssr119599 transcription start site region 119599 212 bp downstream
Tssr119600 transcription start site region 119600 153 bp downstream
Tssr119601 transcription start site region 119601 120 bp downstream
Tssr119602 transcription start site region 119602 73 bp downstream
Tssr119603 transcription start site region 119603 629 bp upstream
Tssr122343 transcription start site region 122343 527 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory