rs212250528 SNP Detail

Summary

• ID
  rs212250528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76169804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGCTGT CCCCGGGATC
  CGTGTTCCCG GAGCTCCCCG CGGGCCTCCC CCGGCCTCCG CCGCCTCCAC GGGCCGCGCA
  CCCAGGCCGT GCCCGGGCGG CGCGGCGTCC GCTCCCGCGA GCTCCGCACG GAGCCCGGGC
  CGCGATTGCC ACTCACCGAG GCCGCCGCGG CTCCGGGCCG CCGATCCGCG TCGCTCCCTC
  Y
  TTCCCAGGTT AGCCGTGCCC TGCGGCCGCG CGAGGCCACG GGCGCTGCGC TCGGGCGGGC
  TGGGGCCGGC TCGTCCTCCG CCTGCGCCGC GGTCGCCGTC GCCTCCCGAG TTCGGGGCTC
  TGCTGCAATG TCTGCGAGGC TGACTTTGAG CGCCTCGCTC GCCGCCCGCC CGCCGCAGCC
  GCGCTCCTCC CTCCGCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396907175	MGP_WTSI_16_76373161	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212250528					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396907175	MGP_WTSI_16_76373161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76169804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8372	CpG island 8372	within coordinates
Nrip1	nuclear receptor interacting protein 1	within coordinates
Rr325475	regulatory region 325475	within coordinates
Tssr139017	transcription start site region 139017	181 bp upstream
Tssr139018	transcription start site region 139018	277 bp upstream
Tssr141820	transcription start site region 141820	98 bp downstream
Tssr141821	transcription start site region 141821	923 bp downstream
Tssr141822	transcription start site region 141822	938 bp downstream
Tssr141823	transcription start site region 141823	956 bp downstream