rs212267892 SNP Detail

Summary

• ID
  rs212267892
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70405410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATAACA AAAAAAAAAA
  AAAAAACCCA AAACCTTAAC CTTAACCTAA CTTTACTAAC AATCTTCTTC TCCAAATTCT
  TTCTAGTGTT GATGGTCTTA TTGCTAACAA TCTACATCTC TATGTTCTTT CCTAGGGAGG
  TGAGTGAATC ATTAATCTGT TCCAGCAGTG ATGCTTGAAA ACAATTAAGC AGTTTTATAG
  W
  AAGTGCCAAG GACAATGCCC AGTGACAGGC TGGAAGTCCC CTTAGAGTTT TCATACAACT
  CATTGATTAG GAAGGATGTG AAGACTGGAT AGACAAGTCG CAAAGCTCCA TAAGAGCATG
  AAGTGCTTAG GACATGTAGT CCTTGATGTA ATCCTCAGAG CTCTGCCTTT CTGAGGCACA
  CACACCACAG TTGTGCTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss368703278	MGP_WTSI_6_70378420	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A	A	A	A	T	T	A	A	A	T	T	T	A	A	A	T	T	T	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs212267892					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A	A	A	A	T	T	A	A	A	T	T	T	A	A	A	T	T	T	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368703278	MGP_WTSI_6_70378420	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70405410 () rs orientation: forward

Symbol	Name	Function Class
Gm6157	predicted gene 6157	503 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Tssr61316	transcription start site region 61316	1542 bp downstream