rs212268475 SNP Detail

Summary

• ID
  rs212268475
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34727570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCTCTAGC CTCAGGGAGC CATGTTCTAC CCTTGCTTCT
  CTGAGCCCAG CTTCCTGAAA TTCCACACGT CCTGAGGTCC TGAGATCCTG AGATCCTGAG
  R
  TCCTGAGGTC CTGAGATCCT GAGGTCCTGA GGTCCTGAGG TCCTGAGATC CTGAGGTCCT
  GAGGTCCTGA GGTCCTGAGA TCCTGAGGTC CTGAGGTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss374223357	MGP_WTSI_8_35323470	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	A	A	A	G	A	G	G	G	G	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs212268475					SNP	A	A	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	A	A	A	G	A	G	G	G	G	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374223357	MGP_WTSI_8_35323470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34727570 () rs orientation: forward

Symbol	Name	Function Class
Gm63978	predicted gene, 63978	within coordinates
Gm63981	predicted gene, 63981	within coordinates
Rr661992	regulatory region 661992	1452 bp proximal
Tssr80908	transcription start site region 80908	112 bp downstream