rs212278568 SNP Detail

Summary

• ID
  rs212278568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81017276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAACATG CGTGGTGTGC
  GGTTTGATGT TCATGATGTG ACCCTGCATG CTGATGCCAT TCACCGGGGA GGTGGCCAGA
  TCATCCCCAC AGCACGCCGC TGCCTGTATG CCAGTGTGCT GACCGCACAG CCCCGCCTCA
  TGGAGCCTAT CTATCTGGTG GAGATCCAGG TAACTTGTGT ATCTTAGGTG GTGTCTGTCT
  R
  TCCTCCTGCC TCTGCCCACT GCTCACCATG TTCTCTCTTT TTCCTCGAAG TGTCCTGAGC
  AAGTGGTGGG TGGCATCTAC GGTGTCCTGA ACAGGAAGCG TGGCCATGTG TTTGAGGAGT
  CCCAGGTGGC TGGTACCCCC ATGTTTGTGG TCAAGGCATA CCTGCCTGTC AATGAGTCCT
  TTGGTGAGTG TCTGGTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381032092	MGP_WTSI_10_80644187	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212278568					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381032092	MGP_WTSI_10_80644187	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81017276 () rs orientation: forward

Symbol	Name	Function Class
4930442H23Rik	RIKEN cDNA 4930442H23 gene	1163 bp downstream
Cpgi1951	CpG island 1951	1105 bp proximal
Dapk3	death-associated protein kinase 3	1563 bp upstream
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435545	regulatory region 435545	1746 bp distal
Rr435546	regulatory region 435546	1254 bp distal
Rr435547	regulatory region 435547	1073 bp proximal
Rr435548	regulatory region 435548	1986 bp proximal
Tssr3283	transcription start site region 3283	985 bp upstream
Tssr94702	transcription start site region 94702	1859 bp downstream
Tssr94703	transcription start site region 94703	1794 bp downstream
Tssr94704	transcription start site region 94704	1768 bp downstream
Tssr94705	transcription start site region 94705	1703 bp downstream
Tssr94706	transcription start site region 94706	1535 bp downstream
Tssr94707	transcription start site region 94707	1480 bp downstream
Tssr94708	transcription start site region 94708	1424 bp downstream
Tssr94709	transcription start site region 94709	1166 bp downstream
Tssr94710	transcription start site region 94710	958 bp upstream
Tssr94711	transcription start site region 94711	1558 bp upstream
Tssr94712	transcription start site region 94712	1614 bp upstream
Tssr94713	transcription start site region 94713	1780 bp upstream
Tssr94714	transcription start site region 94714	1842 bp upstream
Tssr98571	transcription start site region 98571	1663 bp upstream