rs212279763 SNP Detail

Summary

• ID
  rs212279763
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3280377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCAACTA GATTTCCTAT
  ATACTGCTTG AGGGGAGTTG GAAGGAAGAC ATTTTACTTC TGGGCTGGTA AAAAGGGTGG
  ACTTTACAAT ATAGCTAAAG GAATTCAATG TTTGTGTAAC ATGTATTTTC AGCTAATGAT
  ACCCTTTCTG TGTTCCTACT ATATATGGAT AACCCAAACC TCAAATGTTA GTAAAGGAAT
  R
  TGACTGAACT GGCCCTAGCA AAGTACAATT TAAATATATT GCTTCCAGAC AGATAATTCT
  TAGTTGTGCT GTCTATGTGG TCTTAAATTC TTCCTGCTTC TGCAATCAGC ATCCGCTCTT
  ACAACTGTGT AGTGCTTTTG GGGCTCCTAA TCCACCCCAC TCCACGATGC CTTCTGACAC
  AGTGACTCTG TACTCACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382239526	MGP_WTSI_11_3230380	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212279763					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382239526	MGP_WTSI_11_3230380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3280377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	1395 bp proximal
Gm12592	predicted gene 12592	within coordinates
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	354 bp upstream
Rr402383	regulatory region 402383	1231 bp upstream
Rr402384	regulatory region 402384	1878 bp upstream
Rr441525	regulatory region 441525	1579 bp distal
Rr441526	regulatory region 441526	1974 bp distal
Rr441527	regulatory region 441527	within coordinates
Rr441528	regulatory region 441528	791 bp proximal
Rr441529	regulatory region 441529	1442 bp proximal
Tssr3405	transcription start site region 3405	377 bp upstream
Tssr100039	transcription start site region 100039	144 bp upstream
Tssr100040	transcription start site region 100040	291 bp upstream
Tssr100041	transcription start site region 100041	363 bp upstream
Tssr100042	transcription start site region 100042	400 bp upstream
Tssr100043	transcription start site region 100043	404 bp upstream
Tssr100044	transcription start site region 100044	439 bp upstream
Tssr100045	transcription start site region 100045	455 bp upstream
Tssr100046	transcription start site region 100046	502 bp upstream
Tssr100047	transcription start site region 100047	539 bp upstream
Tssr100048	transcription start site region 100048	569 bp upstream
Tssr106459	transcription start site region 106459	803 bp downstream
Tssr106460	transcription start site region 106460	1876 bp downstream
Tssr106461	transcription start site region 106461	1900 bp downstream