rs212292823 SNP Detail

Summary

• ID
  rs212292823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63081756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCTTGC TTTGAGGTCT
  TACTAACTTT TGTTTTTCTC CTCAGACATA GGGTACCTCC CAGTTTCCAG TGTTTCAGAA
  GGGACTTTTG TATTGAAACT GGAAGACCAA GGTCATTCCA AGCATGTTGT GCTGGGGCAA
  TGCATCCTAT GGACAACTAG GTTTGGGAGG AATTGATGAA GAAATTGTAC TAGAGCCCAG
  R
  AGAAGTGACT TTTTCGTGAA CAAAAAGGTC CGAGATGTAG GCTGTGGACT CAGGCACACT
  GTGTTTGTCC TGGATGATGG GACTGTGTAC ACATGTGGAT GTAATGATCT AGGACAGCTA
  GGTCATGAAA AGTCCAGAAA GAAACCAGGT ACGGGACATT TCTCTATTTC TAATAATTGA
  TCATTTATTT CACTCTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380635814	MGP_WTSI_10_62708725	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212292823					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380635814	MGP_WTSI_10_62708725	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63081756 () rs orientation: forward

Symbol	Name	Function Class
1700120B22Rik	RIKEN cDNA 1700120B22 gene	1824 bp upstream
Cpgi1647	CpG island 1647	1399 bp distal
Gm66860	predicted gene, 66860	1534 bp downstream
Herc4	hect domain and RLD 4	within coordinates
Rr432767	regulatory region 432767	1361 bp distal
Rr432768	regulatory region 432768	858 bp distal
Rr432769	regulatory region 432769	1011 bp distal
Rr432770	regulatory region 432770	1536 bp proximal
Tssr93753	transcription start site region 93753	1991 bp downstream
Tssr93754	transcription start site region 93754	1964 bp downstream
Tssr97911	transcription start site region 97911	1807 bp upstream