rs212295070 SNP Detail

Summary

• ID
  rs212295070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35287019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGCCAC GCAGGAGCCA
  CCCACCCCCA TGGGTTTTGA TAGGGGACTA GGTTTGGGGA CCGAATGGGT GGAAGGAGGG
  AGAACCCATC CCTTTGGGAA GCTGTAGGGC ATGGGGAATG ATGGGGCTTA GAAAATGGAC
  AATGGCCAAA CACCAAGTAT GGATCATTCA GCTTGTTAAG GGGGGGTGGG GGTGGGGGAG
  R
  AGGCTTGGCG GGGCGGGGGT GGGGGGGAGA AGGAAAGACA GAGGAATACT GTATAGGAGT
  ATTGGAGAGG TCACTTGGGT GTGGTTCACC AGGACAGGTA TGTGTGCAAT TGGGAGGCAG
  AGGAAGAGAA TGGGCAGAGG AGATGTTGTT GGGAAAGCAG CCAGGGTCTT GCAGTTGGCT
  GAAGGTGTAT TCCTGGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
ss370980588	MGP_WTSI_7_36372613	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
rs212295070					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370980588	MGP_WTSI_7_36372613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35287019 () rs orientation: forward

Symbol	Name	Function Class
Ankrd27	ankyrin repeat domain 27	within coordinates
Cpgi18874	CpG island 18874	619 bp distal
Rr167549	regulatory region 167549	within coordinates
Rr400265	regulatory region 400265	1264 bp downstream
Tssr65908	transcription start site region 65908	1304 bp downstream
Tssr65909	transcription start site region 65909	1284 bp downstream
Tssr72045	transcription start site region 72045	1992 bp upstream
Tssr72046	transcription start site region 72046	645 bp upstream