rs212299752 SNP Detail

Summary

• ID
  rs212299752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8969966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGGTACA GTTTACCTAG
  CATGCACAAA CCCTGGATTT GTGACAGACG TAGGTAGGGG ATCAGGAGAC AGAAGCAAGG
  GGGTCAGAAA CTGAAGAGCA TCCTAAGCTA CATAGTGAGC TGGAGGCTAG GTTGCGATCA
  TGTCATAAAA CAAAAATAGA AAGGAAAAGA GAAAGAACGG GGAAGGGAAA TTGAGACTAT
  R
  AATTAAAGAG GGGCTGGGAA GATAACTCAG TGGTTAAGAA CACTTGAGGA CCTGGGTTTG
  GTTCCGAGTA CCAACATGGA GGCTTACAAC CAGTCGTAAC AACAGTTCCT GAGAATCCAA
  CACCCTTTTC TGGCCTCCAG TGGGCACTTT ACCCACTGAG CCATCTCCTT ATGCCCAGTC
  CATGTTCTTA ACAGACATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323886799	CHEV_12_8926772	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212299752					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8969966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	1432 bp proximal
Gm60663	predicted gene, 60663	within coordinates
Rr403227	regulatory region 403227	1839 bp upstream
Rr462715	regulatory region 462715	1142 bp proximal
Rr462716	regulatory region 462716	1643 bp proximal
Rr462717	regulatory region 462717	1780 bp proximal
Rr462718	regulatory region 462718	1883 bp proximal
Tssr112751	transcription start site region 112751	1632 bp upstream
Tssr112752	transcription start site region 112752	1721 bp upstream
Tssr112753	transcription start site region 112753	1741 bp upstream
Tssr115725	transcription start site region 115725	1878 bp downstream