rs212308894 SNP Detail

Summary

• ID
  rs212308894
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTT CCAGTATGCT
  CCAAACACAG TCTCTCTAAG TTTTTGGAGA CATCTGTGCA CACAATACTG TGTTCTTTTC
  TTCGTGCAGC CTTGATGCCT CTGCGCCTTC TGGAATTGGT GTAAGAAATT ATGGCTCTCA
  AAAATGTGGT GCATGGCTGG GTGGTGGTGG CGGCAGTGGC AGCAGCAGCG GCAGCAGCAG
  T
  GGCAGTGGCA GCGGTGGTAC ACTCCTCTAA TCCCAGCACT CAAGAGGCAG AGGCAAGCAG
  AGATCTCTGT GAGTTCAAGG CCAACTTGTC TATGGAGCAA GTTCCAGGAC AGCCAGGGCT
  GTTGTTACAC AGAGAAATCC TGTCTTGAAA GCTAAATTAA AATAATAATA ATAATGTGGT
  GCTGAATGGT TATGGGTTTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss351550408	MGP_WTSI_1_137684890	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs212308894					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351550408	MGP_WTSI_1_137684890	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716051 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	20 bp distal
Rr419277	regulatory region 419277	313 bp distal
Rr419278	regulatory region 419278	315 bp proximal
Rr419279	regulatory region 419279	634 bp proximal
Rr419280	regulatory region 419280	1421 bp proximal
Rr419281	regulatory region 419281	1692 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron