rs212315679 SNP Detail

Summary

• ID
  rs212315679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:78699958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGGCCGG GGCCCGCGTG
  GGGGGCGGCG GGGGCGGGGG CGGCAGCTTT GTTCGCGCCG GGCGCCGCGC TCCTCAGTCC
  GCCGCGCTAG TCAGTCAGCG GCGCGGGGCG GCGGGTCCCG CATCCCCCGG CGGGCGGGCG
  CAGTGGCGCG GTCCCCTGCG CGGCCCTCCC CACAAAGGAC CGCGGAGCTG CGTGGCCCAG
  Y
  GCTCGCCCCG GGGCGGGCCG CGCCAATTTG TTGCACTTCT GGGGGTGGGG GGTGGGGGAG
  GGCTTTTGTT TGTTTGTTTG TTTTGCCCTC GGGGTTTTGG CCGCTTTGCG GATTTTTTTT
  TTTTTTTTTA AAATAACAAA ATGTCGGTCG GTGAGGGAGG AATTGAGCGG GGAACGTCGA
  TGGCACCGGG AGCTTTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354575688	MGP_WTSI_2_78709771	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs212315679					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354575688	MGP_WTSI_2_78709771	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78699958 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11839	CpG island 11839			within coordinates
Rr559887	regulatory region 559887			557 bp distal
Rr559888	regulatory region 559888			682 bp distal
Rr559889	regulatory region 559889			within coordinates
Rr559890	regulatory region 559890			399 bp distal
Tssr18521	transcription start site region 18521			858 bp downstream
Tssr18522	transcription start site region 18522			806 bp downstream
Tssr18523	transcription start site region 18523			505 bp downstream
Tssr18524	transcription start site region 18524			472 bp downstream
Tssr18525	transcription start site region 18525			451 bp downstream
Tssr18526	transcription start site region 18526			352 bp downstream
Tssr18527	transcription start site region 18527			293 bp downstream
Tssr18528	transcription start site region 18528			238 bp downstream
Tssr18529	transcription start site region 18529			103 bp downstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant