rs212316299 SNP Detail

Summary

• ID
  rs212316299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85531936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATTCGT GTGAATATGC
  TCATGTTAAA AGAGCAGGCT TCCTGGTGCC TTGGCAACTT AGTCAGAGCC TTGAGGAGGA
  AGCCACCTAG ATCTGGGAGG CAGATGTGTG CTCATTCACT ATCCTTCGTG GAGAAGTTGA
  GTTGCCCTCT CAGGCTAGAT TTGATGGTGT GAGATGATTC CAAAGTTAGA ATCTGCCCCA
  Y
  GCCCCAACAA GATTCCCAGC ACTGCAGGGA TGGTTCGATG GGTTAGAGCG CTTACTGGCT
  GGGCATGGTG CCAATATGTC TTTAATCCTA GGGCCCAGGA GGCAGAGGTA GGCGGATCTC
  TGTGAGTACA AGGCCAGACT TTATAAATAG TAAGTTCTAG AACAGCCAGG GCTCTGTAGG
  GAGACTCTGT CTCAAAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325042434	CHEV_15_85478165	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212316299					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85531936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7486	CpG island 7486	1408 bp distal
D130051D11Rik	RIKEN cDNA D130051D11 gene	within coordinates
Gm62280	predicted gene, 62280	within coordinates
Lncppara	long noncoding RNA near Ppara	within coordinates
Rr507252	regulatory region 507252	1285 bp distal
Rr507253	regulatory region 507253	784 bp distal
Tssr132526	transcription start site region 132526	1608 bp downstream