rs212323194 SNP Detail

Summary

• ID
  rs212323194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143654274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT TAACTGTGTA GATCACAGAG
  R
  AGCTGGGCAA AAGGAAGCAT GATCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320010609	CHEV_1_145625666	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212323194					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143654274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi837	CpG island 837	476 bp distal
Gm25663	predicted gene, 25663	392 bp upstream
Gm29170	predicted gene 29170	within coordinates
Ro60	Ro60, Y RNA binding protein	1480 bp upstream
Rr396352	regulatory region 396352	1162 bp downstream
Rr396353	regulatory region 396353	168 bp downstream
Rr419943	regulatory region 419943	1479 bp distal
Rr419944	regulatory region 419944	884 bp distal
Rr419945	regulatory region 419945	1371 bp distal
Rr419946	regulatory region 419946	175 bp distal
Tssr9196	transcription start site region 9196	1209 bp downstream
Tssr9197	transcription start site region 9197	1191 bp downstream
Tssr14094	transcription start site region 14094	1497 bp upstream
Uchl5	ubiquitin carboxyl-terminal esterase L5	within coordinates