rs212326957 SNP Detail

Summary

• ID
  rs212326957
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144110729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATAGG AGCCAACAGT
  GCACAGGCTT TCTACGTAAG ACACATATGG TATGCAATTC TACCCTAAAG TCATCTTAAG
  GAGAGAACAC CTTGGGGTAA AAGACTTTAT AGTAATTAAA ATGTCTGGAT ATCAGACTTC
  TCCTTTCAGG CCTCCTTACC TTGCCAAGGA ACTTTACTAG CATTCAAACT CCTCAGCACT
  W
  GCTCAGGGTT AGAGGGAATC CCAGAGTTTC ATTCTCATCT GAAGAATCCT TAGATTCTAA
  TCTAGTCACT AGAGCAACTT CCAGAATCCC ATTTTGATAG AAATTCCAAA CTAAATAATC
  CGAACATTTA AATAAAATGG CAAAATTTAT TAGCTGACAA ATTTGCCCAA GTTGAACTCC
  AGTTCTTTGA CACTTGCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355978195	MGP_WTSI_2_144094545	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212326957					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355978195	MGP_WTSI_2_144094545	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144110729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	1307 bp proximal
Rr397362	regulatory region 397362	1942 bp upstream
Rr566423	regulatory region 566423	618 bp distal
Rr566424	regulatory region 566424	141 bp proximal
Rr566425	regulatory region 566425	1005 bp proximal
Rr566426	regulatory region 566426	1753 bp proximal
Snx5	sorting nexin 5	Intron
Tssr20524	transcription start site region 20524	1765 bp upstream
Tssr20525	transcription start site region 20525	1813 bp upstream
Tssr26594	transcription start site region 26594	1257 bp downstream
Tssr26595	transcription start site region 26595	1631 bp downstream
Tssr26596	transcription start site region 26596	1695 bp downstream
Tssr26597	transcription start site region 26597	1971 bp downstream