rs212345317 SNP Detail

Summary

• ID
  rs212345317
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19428670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTCAGAT AGGCCTAGTG
  GCGCGAACCT GTAATTCCAG CCTTTGAAGA TGAGGCAGGA GGGTTCAGAG TTCAAGGCCA
  GCGTGGCTCA AATAACATCA CAATAATTCA GGTCTTCAGA GGGAGACATT CCCTCTATAC
  TCTCCCCTCA TCTTGATATT TGAGAGTAGT GAGGCTCTGG GGGTGTGCTC CTAGCCCCTG
  K
  GCATGAAGTG TGGCTGTCTA GGGCCCTGTC ACTAGCCCAC CGACCCATCT TCTCATTGGG
  CCTAATGAGT CATGTGTGGG AGTGGTGCCT GCCTCCAGAT AATGCTGAGT TTGATGCCAG
  GAAAAGCTGC AGGCTCGGGG TGTGCCAGAG GCAGTTGAGT TCTGAAGCCT TGGCCCGACC
  CAAGACACAG CTCAAGCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754769	MGP_WTSI_7_20280094	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G	G	G	G	T	G	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	T	G	G	T	G	T	G	T	G	G	G	G	T	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212345317					SNP	T	T	T	G	G	G	G	G	T	G	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	T	G	G	T	G	T	G	T	G	G	G	G	T	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754769	MGP_WTSI_7_20280094	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19428670 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	1364 bp downstream
Cpgi18507	CpG island 18507	1776 bp proximal
Rr643238	regulatory region 643238	1595 bp distal
Rr643239	regulatory region 643239	within coordinates
Rr643240	regulatory region 643240	1706 bp proximal
Rr643241	regulatory region 643241	1891 bp proximal
Tssr2112	transcription start site region 2112	1706 bp upstream
Tssr2113	transcription start site region 2113	1731 bp upstream
Tssr2114	transcription start site region 2114	1846 bp upstream
Tssr2115	transcription start site region 2115	1882 bp upstream
Tssr2116	transcription start site region 2116	1957 bp upstream
Tssr2117	transcription start site region 2117	1979 bp upstream
Tssr64880	transcription start site region 64880	1523 bp upstream
Tssr64881	transcription start site region 64881	1575 bp upstream
Tssr64882	transcription start site region 64882	1619 bp upstream
Tssr64883	transcription start site region 64883	1657 bp upstream
Tssr64884	transcription start site region 64884	1684 bp upstream
Tssr64885	transcription start site region 64885	1763 bp upstream
Tssr64886	transcription start site region 64886	1784 bp upstream
Tssr64887	transcription start site region 64887	1816 bp upstream
Tssr70972	transcription start site region 70972	1834 bp upstream
Tssr70973	transcription start site region 70973	1547 bp downstream
Tssr70974	transcription start site region 70974	1593 bp downstream
Tssr70975	transcription start site region 70975	1621 bp downstream
Tssr70976	transcription start site region 70976	1656 bp downstream
Tssr70977	transcription start site region 70977	1704 bp downstream
Tssr70978	transcription start site region 70978	1719 bp downstream
Tssr70979	transcription start site region 70979	1743 bp downstream
Tssr70980	transcription start site region 70980	1753 bp downstream
Tssr70981	transcription start site region 70981	1774 bp downstream
Tssr70982	transcription start site region 70982	1788 bp downstream
Tssr70983	transcription start site region 70983	1821 bp downstream
Tssr70984	transcription start site region 70984	1838 bp downstream
Tssr70985	transcription start site region 70985	1903 bp downstream
Tssr70986	transcription start site region 70986	1936 bp downstream
Tssr70987	transcription start site region 70987	1966 bp downstream