rs212354309 SNP Detail

Summary

• ID
  rs212354309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116510209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGTGCAC TCAGCTCTTT
  TTCTTTTCTT TTTAAAAAAT TATTTTATTA CCAGGTGGTG GTGATACATG CCATTAATCC
  TAGCAATCAG GAGAAGAGGC AAGCAGATCT CCAAATTCAA GGCCAGCCTG TTCTACAGAG
  TGCAACCCTG TCTCAAAAAA ACAAAAACAA AAATTTATTT TTACTTGTAT GTGTGTGTGC
  Y
  CGAGTATATG TCTGTTTACC ACATGCAGGC AGGAGCTTAA GGAGGTGAGA AATGACCTAG
  ACCTGCAGGT CATTCTTCAG TGACAGGGTC CTGAGAGAGA GGACCGGGAG ATCAGAAGAT
  AAGCAGAAAG GTAAAGTTTC AGATGGGGAG GTCTTTCACA AACCATGTCT GTTAAGAAGC
  ACAGCATCTT ATATATTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362953559	MGP_WTSI_4_116325617	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212354309					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362953559	MGP_WTSI_4_116325617	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116510209 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	1338 bp upstream
Cpgi14637	CpG island 14637	1305 bp distal
Rr597944	regulatory region 597944	1343 bp distal
Rr597945	regulatory region 597945	1325 bp distal
Rr597946	regulatory region 597946	842 bp distal
Tssr38539	transcription start site region 38539	1477 bp downstream
Tssr42909	transcription start site region 42909	1603 bp upstream
Tssr42910	transcription start site region 42910	1586 bp upstream
Tssr42911	transcription start site region 42911	1566 bp upstream
Tssr42912	transcription start site region 42912	1463 bp upstream
Tssr42913	transcription start site region 42913	1441 bp upstream
Tssr42914	transcription start site region 42914	1376 bp upstream
Tssr42915	transcription start site region 42915	1347 bp upstream
Tssr42916	transcription start site region 42916	1330 bp upstream