rs212369444 SNP Detail

Summary

• ID
  rs212369444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATACAG TTGGGTTTGA
  ACTATATGTT TTAATGGCCA CGGTTTTGTA AGACATTTGG TCCTTTGTTT TCCCAGTTAT
  TACTCGATTG TAATTTTATA TCGCCAGCAA TGGACTGAAA CGGTCCGCAA CCTCTTCTTT
  ACAACTGGGT GACCTCGCGG CTGTGCCAGC CATTTGGCGT TCACCCTGCC GCTAAGGGCC
  R
  TGTGAACCCC CGCGGTAGCA TCCCTTGCTC CGCGTGGACC ACTTTCCTGA GGCACAGTGA
  TAGGAACAGA GCCACTAATC TGAAGAGAAC AGAGATGTGA CAGACTACAC TAATGTGAGA
  AAAACAAGGA AAGGGTGACT TATTGGAGAT TTCAGAAATA AAATGCATTT ATTATTATAT
  TCCCTTATTT TAATTTTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815786	CHEV_6_70674955	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212369444					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701945 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1485 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1474 bp upstream
Igkj3	immunoglobulin kappa joining 3	1701 bp downstream
Igkj4	immunoglobulin kappa joining 4	1376 bp downstream
Igkj5	immunoglobulin kappa joining 5	1038 bp downstream
Rr158	regulatory region 158	990 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	174 bp upstream
Rr399685	regulatory region 399685	586 bp upstream
Rr399686	regulatory region 399686	1550 bp upstream
Tssr1880	transcription start site region 1880	1889 bp upstream
Tssr56953	transcription start site region 56953	1414 bp downstream
Tssr56954	transcription start site region 56954	1282 bp downstream
Tssr56955	transcription start site region 56955	1061 bp downstream
Tssr56956	transcription start site region 56956	847 bp upstream
Tssr56957	transcription start site region 56957	1469 bp upstream
Tssr56958	transcription start site region 56958	1516 bp upstream
Tssr56959	transcription start site region 56959	1534 bp upstream
Tssr56960	transcription start site region 56960	1557 bp upstream
Tssr56961	transcription start site region 56961	1571 bp upstream
Tssr56962	transcription start site region 56962	1579 bp upstream
Tssr56963	transcription start site region 56963	1628 bp upstream
Tssr56964	transcription start site region 56964	1643 bp upstream
Tssr56965	transcription start site region 56965	1649 bp upstream
Tssr56966	transcription start site region 56966	1660 bp upstream
Tssr56967	transcription start site region 56967	1675 bp upstream
Tssr56968	transcription start site region 56968	1699 bp upstream
Tssr56969	transcription start site region 56969	1735 bp upstream
Tssr56970	transcription start site region 56970	1748 bp upstream
Tssr56971	transcription start site region 56971	1768 bp upstream
Tssr56972	transcription start site region 56972	1794 bp upstream
Tssr56973	transcription start site region 56973	1832 bp upstream
Tssr56974	transcription start site region 56974	1864 bp upstream
Tssr56975	transcription start site region 56975	1897 bp upstream
Tssr61321	transcription start site region 61321	1521 bp downstream
Tssr61322	transcription start site region 61322	1686 bp downstream
Tssr61323	transcription start site region 61323	1701 bp downstream
Tssr61324	transcription start site region 61324	1791 bp downstream
Tssr61325	transcription start site region 61325	1857 bp downstream
Tssr61326	transcription start site region 61326	1892 bp downstream
Tssr61327	transcription start site region 61327	1906 bp downstream
Tssr61328	transcription start site region 61328	1997 bp downstream