rs212381284 SNP Detail

Summary

• ID
  rs212381284
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184468378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCCAGAG CTGTGCTGGA
  CTTCTGTTTC TGTCTTGAGA TTCTGGGGAA TATAATATGT GAAGTTACTC CTATCTCCAC
  ATGGGGACTC CATCTCTGGT TCACTTTCTG TCAAACATGC TACCAGGGTG GGAGTTGTTT
  TGTTTTGTTT TGTTTTGTTT TGTTTGGAAG GAGAGAGAAA CAAATATTTG TAAAGAAAAC
  R
  GAAGTAGAAA TGCAGCATGT CCTGGTATTG AAGACTTTGA GAGACTTGCC TGCTCCTCCA
  CCAGCTAGAG TTAGATTTAT GGCCCGCTGG TCCAGTTCAC AATTGTCGGT GGATGCAGGA
  CGTTGGGTGG GTGGGTGGGG CTTCTAAATA TTACAGTTTA GGCTCTAGAG AACATTTACA
  AGGAAAGAGA GAGAGGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320168854	CHEV_1_186560060	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212381284					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184468378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1159	CpG island 1159	1435 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425268	regulatory region 425268	107 bp distal
Rr425269	regulatory region 425269	1631 bp proximal
Rr425270	regulatory region 425270	1894 bp proximal
Tssr10590	transcription start site region 10590	772 bp downstream
Tssr15648	transcription start site region 15648	1154 bp upstream