rs212387121 SNP Detail

Summary

• ID
  rs212387121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151385881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTGTCC CCCTCCCCAT
  CCTTCCTCTG TTTCGTCTGC TTCTCCCTGC TCCCCTCCAC TGTCACCACC CCCACCTTTT
  TTTTTTTTTC CTGCCTGATC TGGCCAAGCT GTTCTGGCTC AAGTTGCCTT TCTCTCCCTA
  ATCAGGGGAG GATCCCGATC TTGAGGGAAA TGACTTACAG GGAAGGGAAG ACAAGACAGC
  Y
  CGCTCACATC CTCCTCTCTG TGCCCCCTTA CTTCTATGAC TTCTTGAGTA GAGAAGCGGG
  CAGGAGATGG CAGAAGTTAA GGACTAGGAC CTTTAAAAAG CTGCCAATGG AAGGAATATT
  GAAATACATC TTGGCAAGAA CAGACTCTTC TCATGGACCA AATCGCAGTA GCTGTTGTGG
  TAAGACCAAT CAGCACCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356131754	MGP_WTSI_2_151369697	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212387121					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356131754	MGP_WTSI_2_151369697	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151385881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12419	CpG island 12419			595 bp distal
Fkbp1a	FK506 binding protein 1a			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm14167	predicted gene 14167			1490 bp upstream
Rr397389	regulatory region 397389			1548 bp downstream
Rr397390	regulatory region 397390			within coordinates
Rr567163	regulatory region 567163			1505 bp distal
Rr567164	regulatory region 567164			1468 bp distal
Rr567165	regulatory region 567165			928 bp distal
Tssr20724	transcription start site region 20724			1458 bp downstream
Tssr20725	transcription start site region 20725			1446 bp downstream
Tssr20726	transcription start site region 20726			1315 bp downstream
Tssr20727	transcription start site region 20727			1291 bp downstream
Tssr20728	transcription start site region 20728			1266 bp downstream
Tssr20729	transcription start site region 20729			1138 bp downstream
Tssr20730	transcription start site region 20730			250 bp downstream
Tssr20731	transcription start site region 20731			70 bp downstream
Tssr20732	transcription start site region 20732			within coordinates
Tssr26737	transcription start site region 26737			1607 bp upstream
Tssr26738	transcription start site region 26738			1474 bp upstream