rs212405302 SNP Detail

Summary

• ID
  rs212405302
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170469995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTACTAG ACATGACCAT
  CACTTGCTTC TTTAGGCTAT GCTGCGTTTG TCCTATGCTG CTTTGGGGCA GGGGAGTCCC
  CATGCTCCTT TGTAGCACTT CCCTGTTCAT GTTCCCCTAT TGCAAGGGCA TCTTATCTTC
  TCTTTGAAAC ACCTAGCTGC CTAACCATCA CTTTTGGCTT AGACAGCCCT CAGCATTTTT
  W
  AAAAAAGATT TATTTATTTA TTGTATGTGA GTACATTGTT GCTGTCTTCA GACACAACAG
  CAGAGGGCAT TGGATCTCAT ACAGATGGTC GTGAGCCACC ATGTGGTTGC TGAGAATTGA
  GCTCAGGACC TCTGGAAGAG CAGTCAGTGC TCTTAATTGC TGAGGCATCT CTCCAGCCCC
  TCAACATTTT TGTAAACTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320111963	CHEV_1_172572557	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212405302					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170469995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	1744 bp proximal
Rr14047	regulatory region 14047	6 bp proximal
Rr25614	regulatory region 25614	1791 bp distal
Rr28935	regulatory region 28935	1405 bp proximal
Tssr280	transcription start site region 280	1918 bp downstream
Tssr9927	transcription start site region 9927	414 bp upstream
Tssr14922	transcription start site region 14922	1902 bp downstream
Tssr14923	transcription start site region 14923	1953 bp downstream