rs212415270 SNP Detail

Summary

• ID
  rs212415270
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133864157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACATTG CCCTGATATC
  TCAAGCCCTT GAGAAAACTG TAAAAAGTTT GAAATTCAGC TTGCCTTCGC CACTTTCTGG
  GCTGAGGCTT CCTGGCAGAA CCTCCGCTCC ACTCAGCTCC ACTCAGCTCC ACTCAGCCCC
  GCCCAGCCCG CCCGCCTCGC CCCGCCCCGC CCCGCCCCGC CCCGCCTATG ACGCTTCACA
  T
  CCCTAGCCCG GGACTTTCTG GAAGCCACCA GCCACGTGTG TGTGTGGAGG GGAAATACGT
  CTCCTGCGCA TGCGCCGTTA GGCCTCTCTC GTGTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CCCCCCCCCT CCTCCGCCAG AGTCAGACCC GCCGCCCCCG CCCCCGCTCC
  CGCCGCGGAG CGGCTCGGGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404657356	MGP_WTSI_X_131497947	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212415270					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404657356	MGP_WTSI_X_131497947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133864157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22945	CpG island 22945	289 bp proximal
Nxf2	nuclear RNA export factor 2	within coordinates
Rr693643	regulatory region 693643	within coordinates
Rr693644	regulatory region 693644	478 bp proximal
Tssr164159	transcription start site region 164159	1287 bp downstream
Tssr164160	transcription start site region 164160	1334 bp downstream