rs212423477 SNP Detail

Summary

• ID
  rs212423477
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93122356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAAAATC ACCACTGAGA
  TTTTTAATGA TACATTTTAT TTATACAGCA CCCCGCATTT TTATAGCATT CGCCTCCGGC
  AAGATCGGTG AATAATTTAG AATAAGGAGT AAAACCAGCC TTCCATAGAA TTCTCAAAAC
  CACATCTGCT GCCCATTTCC TAACCCTCCC TGTACCTGCT GTGAGAGCCC CCCCCACCCC
  M
  CCCCCGCACA CCTTCAGCCT CAGTTTCCCA ACAGGAAGAA GATTCCCACT CGGTACAGCT
  TGCAGATGGT TATGTGCTGG CATTAGAGCA GCCTGAGTTA TCTGAGTTCT TTTTATGCTC
  TGGGCAGAGC TCAGAGCTCT GAGACATAAA AGAGAGCAAG ATGGAAGGAC TGGCTACCTT
  TGGAGTCCAC TGTCCAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss354851445	MGP_WTSI_2_93132168	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	C	A	A	A	C	A	A	A	A	C	A	A	A	C	C	C	A	A	A	A	A	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs212423477					SNP	A	A	A	C	C	A	A	A	C	A	A	A	A	C	A	A	A	C	C	C	A	A	A	A	A	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354851445	MGP_WTSI_2_93132168	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93122356 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr561147	regulatory region 561147			248 bp distal
Tspan18	tetraspanin 18			Intron
				Noncoding-Transcript-Variant