rs212443536 SNP Detail

Summary

• ID
  rs212443536
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44218494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTCACAC AATCCAGTGA
  AGGAAATTCA GAATTTAAAA TTGCCATGCT CAAGCCAGGC GTGGTAGTGC ATGCCTTTAA
  TCCCAGCACT CGAGGGGCAG AGGCAGTCGG ATTTCTGAGT TCGAGGCCAG CCTGGTCTAT
  AAAGTGAGTT CCAGGACAGC CAGGGCTACA CAGAGAAACC CTGTCTCGAA AAAAAAAAAA
  W
  TGCCATGTGC GGCGGCACAT AATTTCACTC CTAGCACTCC AGAGGAAGCG GCAGGTGGAC
  CTCTGAGTTT AAGGCCAATC TGGTTTACAT AGTGAGTCCT GGACCACCCA AGGTTAGACA
  GGGAGAGAGA CCTCCCCTCC GAAAACAAAA TACAGCCAAC CACCACAATG AGCTTGGTGT
  GGTGACACAT ACACACTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322940624	CHEV_9_44115280	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212443536					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44218494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	1123 bp distal
Hinfp	histone H4 transcription factor	1526 bp upstream
Rr195005	regulatory region 195005	507 bp proximal
Rr206299	regulatory region 206299	893 bp distal
Rr368726	regulatory region 368726	1102 bp downstream
Tssr89139	transcription start site region 89139	1509 bp upstream