rs212444641 SNP Detail

Summary

• ID
  rs212444641
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80643503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTACGGGA ACCACGTGGT
  GCTGCTGCTA AAAATGCAGG CTCGCGGGGC TGCCCTGGGC CGCCTGCCCT GCTGCGTGCC
  CACTGCCTAC GCGGGCAAGC TGCTCATCAG CCTGTCCGAG GAGCGCATCA GCGCGCACCA
  CGTGCCCAAC ATGGTAGCCA CCGAGTGCGG CTGCCGGTGA CGCCCGCCCT CCTCCTCCCC
  T
  CCCCCCCCCC CCCCGCCCCC AGTCAGCGCC CTAATAAAGA TCAGCAAACA CTCAGCTGGG
  GTATCTGTGG GTGGAGGAAA CTCCTGTCAA CCTCCCTTCT GGAATGCAAG GCCTGAGTCC
  TTCCCATCCA GCCCCTAACT CCCGTGTGTC CCTCTCACTT TTCTGATTTC AAAACAGGAT
  CTGTGTAGCC CTGGTGGTCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BUB/BnJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	NZO/HlLtJ	SM/J	SPRET/EiJ	SWR/J
ss381025325	MGP_WTSI_10_80270414	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BUB/BnJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	NZO/HlLtJ	SM/J	SPRET/EiJ	SWR/J
rs212444641					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025325	MGP_WTSI_10_80270414	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80643503 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	21 bp downstream
Cpgi1909	CpG island 1909	within coordinates
Cpgi1910	CpG island 1910	498 bp proximal
Jsrp1	junctional sarcoplasmic reticulum protein 1	827 bp downstream
Rr435398	regulatory region 435398	1587 bp distal
Rr435399	regulatory region 435399	550 bp distal
Tssr94625	transcription start site region 94625	1528 bp downstream
Tssr94626	transcription start site region 94626	1259 bp downstream
Tssr94627	transcription start site region 94627	829 bp downstream
Tssr94628	transcription start site region 94628	6 bp upstream
Tssr98516	transcription start site region 98516	9 bp upstream