rs212453540 SNP Detail

Summary

• ID
  rs212453540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51490164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAAAGA GGGCAGGAAC
  ATGCAATGGC CCACAGGGTT GGTGGTGGTG TTTGGTTGGT TTGGTTTTTG CTTTTGTTTT
  TGGAGACAGG GTCTCAGATA TTCAAGTTAG CCTCAAACTC ACAGGGTAGC ATAGGATGGT
  TTCACACTCT CCATCCTCTT GTCTCTACCT CAAGATACTA GGATTATGGG ATGCTCTGTC
  Y
  ATGCAGTGCT AGGCACTGGA CCCAGGATTC TGTACATGGT AGGCAAGCAC TGCCAACTGA
  GCTACATTCC AAGCCCTCAC ATGCCTGTTG TAACTCTAGA CCATCATGCC TGCTCTAATC
  TATTGCATGG ATCCAAGTCT TATTAGGCTT GGAGAATGAG CTCCTGATTG GAACCCACAG
  TTCCAGTCCT GCCTCCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss391089610	MGP_WTSI_14_51872382	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs212453540					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391089610	MGP_WTSI_14_51872382	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51490164 () rs orientation: forward

Symbol	Name	Function Class
D14Mit257	DNA Segment, Chr 14 Massachusetts Institute of Technology 257	1800 bp distal
Gm62421	predicted gene, 62421	within coordinates
Tssr125425	transcription start site region 125425	1157 bp upstream