rs212467133 SNP Detail

Summary

• ID
  rs212467133
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92425282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCGTTTA AATGACCCGA
  TGCACTCTGG TGATGAGTGG GTGGATGCGC TAATTTTGCA TTCTATAGTA ACTAATTAGA
  TTCTTTTCCT CTGGAAACTA AGGCGAGGAG CAAACATTTC TACCTTGGAA TTCCAATTCA
  GAGGGTAACA CTTGGCACAA GTCCAGTTGG ACCCTGTAAC CATCGGTTTT TGTCTTTCTC
  W
  TGGCGCAATA GGTGAAACTT AAGGACTCAG AAGCACCTGG TTCTGTGGAA CAGTGCTCGC
  TTTGTTGGCT GCAGTCACAG GGAAATCTGA ACCTGTATGA GTATTCTGAT TTTGAAGTAA
  CTTTTATCTC ATATCAAAGG TATTTCTTTC AGCATAGTAC TAGAAAAATC ACACAGATAA
  ATGAGAATAG AGACAGAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074163	CHEV_9_92438067	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212467133					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92425282 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	360 bp upstream
Cpgi22147	CpG island 22147	252 bp distal
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	within coordinates
Tssr86520	transcription start site region 86520	957 bp downstream
Tssr86521	transcription start site region 86521	790 bp downstream