rs212471775 SNP Detail

Summary

• ID
  rs212471775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80701016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGCGGC AAGGCACAGA
  GAAGTGAGGT CAAATCGCTC ACAGCTATTG AGTCCTTACA ATCAATCTGC ACACAGCAGC
  TAGGGCAGCG ACCCAGCACT GTGTAAACTG TGGGAGCTCC TACCCCCCAC CCCAGGCTGT
  CCAGCTGGAG GGCAGTGGGT GTGGATGCAT CCTGCCCTGG CTTCCGTGGG TGCACGTGGA
  R
  GGGTCCTCCG ATCGTCAGTG ACTGTCTCCC AGCTGCCCTG GCCTCCCGGG ACGCCAATCC
  CCAGGCGGCC AGGGGCCTGG CGGGGACGGC GGCGCCTGGC AGCGGGGGAT TTGGGTGCGC
  TGGCTGGGCC GCCCCGCCGG GGGTGGATCT GGGTCGTCGG CCCGCCCGCC CTCCCGGCAT
  GCCCTGCTGC TGGCCGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323762497	CHEV_11_80623692	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212471775					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80701016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3390	CpG island 3390	within coordinates
Gm31228	predicted gene, 31228	1096 bp downstream
Rr236899	regulatory region 236899	1016 bp distal
Rr247320	regulatory region 247320	within coordinates
Tmem98	transmembrane protein 98	176 bp upstream
Tssr103551	transcription start site region 103551	167 bp upstream