rs212473752 SNP Detail

Summary

• ID
  rs212473752
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24023261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAAGTGA GTTAGAAAAC
  TTGCCATTGT ACATGGTAAC ATGTGCAAAT TGAGATGTAG GTACGAGCAT TGTTTTATGT
  AGTTTATCAA CAAACATAGA AGTAATTAAG ACAGGAAAAA AGTCATGGGG AATAAATACT
  GAATTTATGA GAAGCTTGTG GGTTTTGTCC ATTTGATTTG GTTAACAACG TTACTAAATA
  M
  GATTATGGCC CACATAGTTC AAAGAAGCAA AAGAAAATTA AAGACCAGAC AAAAAAAAGA
  GGGGGTAAAG TACAAAATGT GTTTAATTTG TAACTTATCC CATTTCAAAC CGGAAAAAGG
  AAATGTCTTT AGAAATACTG CAAGGCAATG TGACTAATAA CTGCCTGCAG GTGTCAGACC
  CAGTAGATCC TTCTGGGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387991681	MGP_WTSI_13_23931147	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212473752					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387991681	MGP_WTSI_13_23931147	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24023261 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	879 bp downstream
Rr475960	regulatory region 475960	160 bp proximal
Rr475961	regulatory region 475961	243 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	156 bp upstream
Tssr4011	transcription start site region 4011	347 bp upstream
Tssr4012	transcription start site region 4012	445 bp upstream
Tssr118875	transcription start site region 118875	123 bp upstream
Tssr118876	transcription start site region 118876	167 bp upstream
Tssr118877	transcription start site region 118877	299 bp upstream
Tssr118878	transcription start site region 118878	320 bp upstream