rs212479063 SNP Detail

Summary

• ID
  rs212479063
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121486803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATGAATGA GGAAAGGAGT GAGGAGTGTC
  AAGGGCGTCC CCGAGGAATG TTTGCATTCA GTGCCAGGCG AAGCCACACT CGAGGTCCAG
  AAGGGTAGTT AGAACAGTGG TCAGAGAATA ATATGCTCat aaataaataa ataaataaat
  W
  aataaataaa taaataaata aCACCTAAGA GAGTGTATGG GGGTCACAAG AGGGAATGCT
  ACACAGGTCA CATGGGATGG GACATCAGAG GACCTTGACG ATTCACTCCA GTGAATTCTG
  GTTGGCATAG AAACCACAGA TTTTAGAGCA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320484431	CHEV_2_121482058	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212479063					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121486803 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563864	regulatory region 563864			891 bp distal
Rr563865	regulatory region 563865			94 bp distal
Rr563866	regulatory region 563866			1862 bp proximal