rs212482243 SNP Detail

Summary

• ID
  rs212482243
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84493388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGAGATGG AGAGGCGGCT
  GAAGATGGGT AGGCGACGGC CAGGGTCCAG GCTGGGGGAC TCGGAGCCGC TGAGGCTGCC
  GGAGCTCAGC GAGCCGCTCA GGTAGCTGTC GCGGTCCGAG AGCGAGTCCG GGGGGCTGGG
  GGGCGCGTCG AACACGGGCG ACTCGGACAG ACGGCGCGGC AGCTGGAAGC CGAAGGGCGG
  S
  GAGGGCGGCG CGGGGGCCGC GGGGGGCTGT GCCGGGGGTG GCGCGGGACC GGTCAGGCCC
  TGCTGCTGGT TGCGGTAGTA GGCGGCGGCG GCCGCGGCGG CGAAGTTGTG GGTCTGGATG
  GCGAGCGGCG TGATGAGGCT GCTCAGCTCC GGGCCGAAAG CGAAGGCGTT GTTAGCGCCG
  GAGGACGAGC AGGAGGCGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss399282269	MGP_WTSI_17_84585300	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs212482243					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282269	MGP_WTSI_17_84585300	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84493388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	within coordinates
Cpgi9566	CpG island 9566	1651 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	1913 bp upstream
Tssr146044	transcription start site region 146044	199 bp downstream
Tssr146045	transcription start site region 146045	1130 bp upstream
Tssr149650	transcription start site region 149650	373 bp upstream
Tssr149651	transcription start site region 149651	319 bp upstream
Tssr149652	transcription start site region 149652	27 bp downstream
Tssr149653	transcription start site region 149653	75 bp downstream
Tssr149654	transcription start site region 149654	215 bp downstream
Tssr149655	transcription start site region 149655	311 bp downstream
Tssr149656	transcription start site region 149656	401 bp downstream
Tssr149657	transcription start site region 149657	617 bp downstream
Tssr149658	transcription start site region 149658	674 bp downstream
Tssr149659	transcription start site region 149659	709 bp downstream
Tssr149660	transcription start site region 149660	740 bp downstream
Tssr149661	transcription start site region 149661	789 bp downstream
Tssr149662	transcription start site region 149662	848 bp downstream
Tssr149663	transcription start site region 149663	912 bp downstream
Tssr149664	transcription start site region 149664	953 bp downstream
Tssr149665	transcription start site region 149665	998 bp downstream
Tssr149666	transcription start site region 149666	1067 bp downstream
Tssr149667	transcription start site region 149667	1156 bp downstream
Tssr149668	transcription start site region 149668	1211 bp downstream
Tssr149669	transcription start site region 149669	1244 bp downstream
Tssr149670	transcription start site region 149670	1777 bp downstream
Tssr149671	transcription start site region 149671	1867 bp downstream
Tssr149672	transcription start site region 149672	1979 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates