rs212485024 SNP Detail

Summary

• ID
  rs212485024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109929837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATACTTTT CCTTGACTAT AACCACACAC
  ATTCGGGGTC ACCGATAAGT ACTAACAGAC ACTTTTGCCT AAGCAGTCAA TTCTTTGTGG
  CCCGTCATTG AGAGCTCAGT CTAACCTTTC ACAGAACAAA AGGCATTTCT CCTTTCAGTC
  Y
  ATGACTCACT TCTTTTGAAA GGGTTCTTCA TTTAAATTTT CAAGATTCCT CATATCATAA
  GCCTTTTCCC ACTGCTGGCC TTTAGTCCTT AGACACATGA CACCACCTTC ACCTGGCTTT
  CCCGAGAGCT TCAGAAGGAC CCTTCACAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320871320	CHEV_3_109825439	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212485024					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109929837 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583457	regulatory region 583457			114 bp proximal