rs212485756 SNP Detail

Summary

• ID
  rs212485756
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57009442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTTGAG GTACTAAGAC
  CTGCTCTGTC TCAGGTCCCA AGAGTTAGCC CTCAGTTGTG TGGACAGAGT CGGACCTCGA
  AGCCTTTAAG CAGTACCCCA TTCATTGCGG GCAGCGCTGG CATTATCCTC TCTTTGATAA
  AGAGCCACCA CCACCATAAG CCCCACTTGG GGTGTCAGGG TTTTGAAAGG AGCGTACTTA
  W
  GGGCGAGAGG TCCCACCAGG CCAGGGAGGG AGCAAGGACT TACACGGGTC CTTAAGCAAA
  TTAATTGCTT GATAAATGCG CTGTGGATGG CCAAGCTGGA TCAATGGATC CATGGAATCC
  CCACCTTTTA CCTTTATGGA CCAAGTACAC TTGTGTACAC AAACACACAC CTTTGCACAC
  AAAAAAATTA ACTATAATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349733827	MGP_WTSI_1_57027127	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212485756					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349733827	MGP_WTSI_1_57027127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57009442 () rs orientation: forward

Symbol	Name	Function Class
9130024F11Rik	RIKEN cDNA 9130024F11 gene	1186 bp upstream
Cpgi267	CpG island 267	282 bp distal
Cpgi268	CpG island 268	546 bp proximal
Cpgi269	CpG island 269	1179 bp proximal
Rr411276	regulatory region 411276	within coordinates
Rr411277	regulatory region 411277	409 bp proximal
Rr411278	regulatory region 411278	679 bp proximal
Rr411279	regulatory region 411279	1208 bp proximal
Rr411280	regulatory region 411280	1565 bp proximal
Satb2	special AT-rich sequence binding protein 2	within coordinates
Tssr6736	transcription start site region 6736	1168 bp upstream
Tssr6737	transcription start site region 6737	1750 bp upstream
Tssr6738	transcription start site region 6738	1897 bp upstream
Tssr11745	transcription start site region 11745	433 bp upstream
Tssr11746	transcription start site region 11746	408 bp upstream
Tssr11747	transcription start site region 11747	984 bp downstream
Tssr11748	transcription start site region 11748	998 bp downstream
Tssr11749	transcription start site region 11749	1030 bp downstream
Tssr11750	transcription start site region 11750	1055 bp downstream
Tssr11751	transcription start site region 11751	1411 bp downstream
Tssr11752	transcription start site region 11752	1429 bp downstream
Tssr11753	transcription start site region 11753	1467 bp downstream
Tssr11754	transcription start site region 11754	1479 bp downstream
Tssr11755	transcription start site region 11755	1900 bp downstream
Tssr11756	transcription start site region 11756	1949 bp downstream