rs212487849 SNP Detail

Summary

• ID
  rs212487849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66210736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTTCTG AGCTGTGACT
  TGGAGTCTAC CATGAGCCCT TTGATGGGAC ATAGAGGCAG GACTGAGGCC ATAAGGACTG
  CCACAGGCTT GGGGTAATAG TGATGGTGTC TCAGCTTGAC GCCCCCAGCA CTCCCCATCA
  AAGCATGGCT TTCTCACCGT CCCCCTGGCA CCCAGGCTAT TTCTCCAGCC ATTCCTCCCC
  R
  CCCCCCTCAA CTCACTGTAC CTTCCTCTCT CTCACAGAAC TGTCCACTCA AGGGAGTAGG
  TATATTAATA AGGAGATTCA GAACGCCGTC CAGGGAGTGA AGCACATAAA AACTCTCATA
  GAAAAAACCA ACGCAGAGCG CAAGTCCTTG CTCAACAGTT TAGAGGAAGC CAAGAAGAAG
  AAAGAGGTAG GGCCAAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367371	MGP_WTSI_14_66592124	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212487849					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367371	MGP_WTSI_14_66592124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66210736 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Rr494179	regulatory region 494179	1950 bp distal
Tssr126260	transcription start site region 126260	1496 bp downstream
Tssr126261	transcription start site region 126261	1479 bp downstream
Tssr126262	transcription start site region 126262	1452 bp downstream
Tssr126263	transcription start site region 126263	29 bp upstream
Tssr126264	transcription start site region 126264	49 bp upstream
Tssr126265	transcription start site region 126265	90 bp upstream
Tssr126266	transcription start site region 126266	134 bp upstream
Tssr126267	transcription start site region 126267	966 bp upstream
Tssr126268	transcription start site region 126268	1550 bp upstream
Tssr126269	transcription start site region 126269	1636 bp upstream
Tssr129260	transcription start site region 129260	64 bp downstream
Tssr129261	transcription start site region 129261	73 bp downstream
Tssr129262	transcription start site region 129262	113 bp downstream
Tssr129263	transcription start site region 129263	126 bp downstream
Tssr129264	transcription start site region 129264	167 bp downstream
Tssr129265	transcription start site region 129265	1574 bp downstream
Tssr129266	transcription start site region 129266	1609 bp downstream
Tssr129267	transcription start site region 129267	1641 bp downstream
Tssr129268	transcription start site region 129268	1703 bp downstream