rs212488489 SNP Detail

Summary

• ID
  rs212488489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118093490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGCCCACA TTGCATTCCA TCTGGGCTCC
  AACTGCCAGA TGCAGTGCCC CGGCTTCCCT CTTCGCACCA TAAGCTCATG CCAACTGTAA
  CGTTGAGATG GGAGAGCATA GTTATCACAG ACCAAGCTCA AAAGCCTTTT CTTCCTAAGG
  R
  TTGTTAATAG TGTGCGCCAC GATGGGGCCC CAGCTCCCCG GATTCTGTGC CTTACATCAC
  TGGAAAAAAA AAATGACATT TACAGGATGC TCAAGACATG GCTCGGATTC TTCATTTCCC
  ATTTATTTCC CCACACCCCC CTGGTTGGCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320468258	CHEV_2_118088745	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212488489					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118093490 () rs orientation: forward

Symbol	Name	Function Class
Gm29232	predicted gene 29232	within coordinates
Gm75384	predicted gene, 75384	595 bp upstream
Rr397203	regulatory region 397203	259 bp upstream
Rr563206	regulatory region 563206	105 bp proximal
Rr563207	regulatory region 563207	308 bp proximal
Rr563208	regulatory region 563208	633 bp proximal
Rr563209	regulatory region 563209	819 bp proximal