rs212489319 SNP Detail

Summary

• ID
  rs212489319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52141574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGACTA GCGATTTGAG
  CCTTGGTAGC AAACACGTCG ACGGTGCAGT GGGAGTTTTT GTTTGTGTTT TGTTTTTTGG
  TTTGGTTTGG TTTTTTTTTG TTTTTGTTTT TGTTTTTTTG GTGAGGTCAT TCTAAATGAA
  GCAAAATGAC ATAGTTCAGG CAGCTTTCTG AGAGCCCCCT CGTCCATCCT TGATTTCCCT
  R
  GAATTCTCCA ATTTTTTCAA CTTTTTTTTT ATAATTCAAA ATACCATGCC AAAGGCATAA
  GGACATAAAC AAATATGAAC TAATTTTCAT TTGGGGAACT ACCTCCTCCC CCTTCTGCTC
  CTCCTCCCCT TCTTCTTCCT CCTCGCCCCC CCACCCCCAA GCCAACGAGC CCCCTGGAAA
  GCAAAGCAAG AAGCTATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398453343	MGP_WTSI_17_51973871	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212489319					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398453343	MGP_WTSI_17_51973871	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52141574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	915 bp distal
Gm6934	predicted gene 6934	within coordinates
Rr370288	regulatory region 370288	1154 bp downstream
Rr528751	regulatory region 528751	1885 bp distal
Rr528752	regulatory region 528752	1384 bp distal
Rr528753	regulatory region 528753	1564 bp distal
Rr528754	regulatory region 528754	766 bp distal
Satb1	special AT-rich sequence binding protein 1	1256 bp upstream
Tssr145166	transcription start site region 145166	1769 bp downstream
Tssr145167	transcription start site region 145167	1746 bp downstream
Tssr145168	transcription start site region 145168	1721 bp downstream
Tssr145169	transcription start site region 145169	1529 bp downstream
Tssr145170	transcription start site region 145170	1509 bp downstream
Tssr145171	transcription start site region 145171	1285 bp downstream
Tssr145172	transcription start site region 145172	75 bp downstream
Tssr148680	transcription start site region 148680	1913 bp upstream
Tssr148681	transcription start site region 148681	1892 bp upstream
Tssr148682	transcription start site region 148682	1868 bp upstream
Tssr148683	transcription start site region 148683	1849 bp upstream
Tssr148684	transcription start site region 148684	1443 bp upstream
Tssr148685	transcription start site region 148685	1408 bp upstream
Tssr148686	transcription start site region 148686	1300 bp upstream
Tssr148687	transcription start site region 148687	1276 bp upstream
Tssr148688	transcription start site region 148688	1247 bp upstream