rs212513447 SNP Detail

Summary

• ID
  rs212513447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126921982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCTCT ATAAAGCAGG
  CTGGCCTAGA ACTCAGAGAT TTCCTGCCTC TGCCTCCCAA GTGCTGGGAT TAAAGGCGTG
  CACCACACCA CCTAGCATTT AGCTTTCTTA GACAGCCTAT GTCTACCTGC ATAGGGATGG
  CACTGCCCAC AGTGGAGGGA CTGTAGCAAT TAGCAATGAA GAAAACGCCC TGTGACATGG
  Y
  CATGGCAAAT CTGATCTGGG GACCTCAGCT GACGTTCCTG TTCGGAGGCA TGTTCTCCAA
  ATTGCAACAT TTCCTCCAAG GGGGAAGAAA AAGAGTCACA AGGCAAATAA AATGTTAACA
  ATGTGGGAGA AAACAGGAAC TTTGAAATAT TCTTGAGGGC AGTGGAAAAA GGGGGAAAAT
  AGTTTGTGAT CAGCCACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355586460	MGP_WTSI_2_126905798	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212513447					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355586460	MGP_WTSI_2_126905798	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126921982 () rs orientation: forward

Symbol	Name	Function Class
Blvra	biliverdin reductase A	within coordinates
Rr38145	regulatory region 38145	1982 bp distal
Rr55562	regulatory region 55562	418 bp proximal
Tssr19977	transcription start site region 19977	1137 bp downstream
Tssr19978	transcription start site region 19978	130 bp upstream
Tssr19979	transcription start site region 19979	175 bp upstream
Tssr19980	transcription start site region 19980	190 bp upstream
Tssr19981	transcription start site region 19981	407 bp upstream
Tssr19982	transcription start site region 19982	449 bp upstream
Tssr19983	transcription start site region 19983	507 bp upstream
Tssr19984	transcription start site region 19984	1494 bp upstream