rs212525511 SNP Detail

Summary

• ID
  rs212525511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107147657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGCATTA TGTGAGTGTT
  TACCCTGGAT TCAACACAGA GGTGGTTGAG AAGACAGAGG GTGAGGTGGT ATCTGTTGCT
  GAACTTTAAA GGTTAAAATT CCCAATATGG AGACAGACAC TGCATCTGTG GTGTTGATGC
  TTCTCACAGA TACACAGGTG AGGCTGCTCT CTAATAAGCT CTGGACAAGC GCCTGTGAGC
  Y
  GGTTAGTCTT TGATGTCTAA TTGATTGGAT TCAGAATTCC TATGGCAACA CACCTCTGGA
  TACGTCTATG AGGGTATTTC CAGCAAAAAG AAATTGAGGC AGAAAGATCC ACCATGGCTG
  TGAGCATCAT CATACCATGA GCTACGGGCA CAAACTAGTG AAAAAGTGGC TGAGTGCCAG
  CAGTCAGTCA TCTCCCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864891	CHEV_3_107043259	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212525511					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107147657 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	1525 bp upstream
Prok1	prokineticin 1	634 bp upstream
Rr582947	regulatory region 582947	1183 bp proximal
Rr582948	regulatory region 582948	1536 bp proximal
Tssr31192	transcription start site region 31192	1448 bp upstream
Tssr31193	transcription start site region 31193	1519 bp upstream
Tssr31194	transcription start site region 31194	1574 bp upstream
Tssr35054	transcription start site region 35054	1634 bp upstream