rs212535027 SNP Detail

Summary

• ID
  rs212535027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41641920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATCGGAG TGATGTGATC
  ATAGCCAGAA ATTAGAAGGA TGATTTGGGC CATTGGGTGG AAAGGAGTTT TAAAAGCATT
  TGAGAGTGAA AGATACTCCT ACCTTTCACA ATGATGAGGG AGTAAAAATA CATCCTTGAC
  AGAGCAGAAA CACACTGGGG TATTGAGGTA CATCAGTAGG CAGAACTCAG AAGGCAGGGC
  R
  AGTAAGAAGA GGACATTCTG GGGTAACTGG TTACCAGCTG CAGCACTGTG AGGCAATGCC
  CCGTGATAAA GAGCCCAGAA GAGGGGATGC TGAGATGCTT CAACCATGAT AACCACTTGT
  CACCACGTCT GATGACCTGA GTTCAATCCC TGGAATCATG ATGGTGGAAG GAAGGCAAGA
  CACAACTCCA CCAAGCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361304377	MGP_WTSI_4_41588953	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212535027					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361304377	MGP_WTSI_4_41588953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41641920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14161	CpG island 14161	1136 bp distal
Enho	energy homeostasis associated	1618 bp upstream
Gm12405	predicted gene 12405	1055 bp upstream
Gm12406	predicted gene 12406	within coordinates
Rr590707	regulatory region 590707	1607 bp distal
Rr590708	regulatory region 590708	1106 bp distal
Tssr41357	transcription start site region 41357	1937 bp upstream
Tssr41358	transcription start site region 41358	1783 bp upstream
Tssr41359	transcription start site region 41359	1687 bp upstream
Tssr41360	transcription start site region 41360	1647 bp upstream
Tssr41361	transcription start site region 41361	1608 bp upstream
Tssr41362	transcription start site region 41362	1576 bp upstream
Tssr41363	transcription start site region 41363	1556 bp upstream
Tssr41364	transcription start site region 41364	1544 bp upstream
Tssr41365	transcription start site region 41365	1518 bp upstream