rs212538022 SNP Detail

Summary

• ID
  rs212538022
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164265265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAGCCAC AGTGACAGGC
  AGATCCCAGT CTCAGACACA GCTGCAGAAC ACACTGGAGG ACACGGGGAG AGATGGCGAG
  ACAGCATTCA GCACGGAGCA CAACACAACC CATCACCTTG ATTTTTCTGT ACTGTCACTT
  AAAATTTAAA GGGCAGTTCC CCCATGACAG CCCACCCCCC AGCCCCAGGA AATAAAGAAA
  W
  AAAAAAAATA ATAATAAAGA CCTGATACCA CAGGAAGAGA CTATGGAGTG TGTTAAAAAT
  GCTCATCGAT GGGCCGTTAC CTTTGAAATT TCAGAGCCAA GAAAATAAGA AAGAAAGGAA
  AAAGTACCAT GCCAGTTTTA TTCCCGTTGA GTATTTACAC CTTGGACAGC AAACCTTGCT
  CACGTAAAGT AGAAAACAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352216529	MGP_WTSI_1_166367827	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212538022					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352216529	MGP_WTSI_1_166367827	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164265265 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Nme7	NME/NM23 family member 7	395 bp downstream
Tssr9784	transcription start site region 9784	779 bp upstream
Tssr14731	transcription start site region 14731	271 bp upstream
Tssr14732	transcription start site region 14732	43 bp downstream
Tssr14733	transcription start site region 14733	152 bp downstream
Tssr14734	transcription start site region 14734	180 bp downstream
Tssr14735	transcription start site region 14735	248 bp downstream
Tssr14736	transcription start site region 14736	281 bp downstream
Tssr14737	transcription start site region 14737	344 bp downstream
Tssr14738	transcription start site region 14738	479 bp downstream
Tssr14739	transcription start site region 14739	645 bp downstream
Tssr14740	transcription start site region 14740	699 bp downstream
Tssr14741	transcription start site region 14741	728 bp downstream
Tssr14742	transcription start site region 14742	835 bp downstream