rs212540339 SNP Detail

Summary

• ID
  rs212540339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76758336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATTTCAC TGCCTGCTGC
  CGTCACACTT CTTTTGAGAG TAGGTATTTG GACAGTAAAA ATGCTAATTG GGACAAAATC
  CACAGGTATT AAAAAGCCAT AGAACTCTTC CCTCCCCTTT TGCCTGAGTT CTTATTACAT
  ACTAATTTCC CAAATGGCAT CAGTATTACA AGGAAAATGA CACACCGGCC TGGGCTATCC
  Y
  AGAGGTTAAC AGCGACCTCC CACCTCCTTC CCCCACTCAG ACCATCTAGC AATTCTCTGT
  AGTGAGCAAG AGCTGTAGAT CTTAAGCAAA GCACACATTT AGCACTCCAA AGGCCCTGGG
  ACTCCCCAAT ATCCTCCAGC ACCACCCCAA ACCATTTGCT TTGCTTGTTG TTGAGTTCAA
  AATCATCTTT TTAGGAACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386556788	MGP_WTSI_12_77812549	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212540339					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386556788	MGP_WTSI_12_77812549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76758336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4785	CpG island 4785	544 bp distal
Rr468233	regulatory region 468233	1550 bp distal
Rr468234	regulatory region 468234	1049 bp distal
Rr468235	regulatory region 468235	525 bp distal
Sptb	spectrin beta, erythrocytic	1015 bp upstream
Tssr116745	transcription start site region 116745	1567 bp upstream
Tssr116746	transcription start site region 116746	1536 bp upstream
Tssr116747	transcription start site region 116747	1508 bp upstream
Tssr116748	transcription start site region 116748	1474 bp upstream
Tssr116749	transcription start site region 116749	1455 bp upstream
Tssr116750	transcription start site region 116750	1409 bp upstream