rs212554633 SNP Detail

Summary

• ID
  rs212554633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144371625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCACAGGG TCACTCTGAG CTTGTCAAGA GCAGGAAGAA
  GTCCCACTGA GGGTCTTTAG GATAAAGCAC AGCCTCAGCT TCAGAGACAG TGCAGTAGAG
  Y
  TTCATTGAAG CCCAAGAGCC TAGAGCCCAA ATGCCTCTCT TGCAGCATTT GAAAAATGTC
  CTACCACATA CTTTAAATCC CCTATGTCGC TCTTCTTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320536516	CHEV_2_144355441	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212554633					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144371625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	1594 bp distal
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	within coordinates
Rr566473	regulatory region 566473	1947 bp distal
Rr566474	regulatory region 566474	1315 bp distal
Tssr20541	transcription start site region 20541	1932 bp downstream
Tssr20542	transcription start site region 20542	1903 bp downstream