rs212557110 SNP Detail

Summary

• ID
  rs212557110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122520138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCCTACTG CCGGAGCTGT CTCTTCAAGG
  GTGATGTATG AGGCTGCTGA GGGTCCTGTG TCCTTAAGTC ACAGCAGCGC CCCATCCCCC
  GACCCTCACT GCACTGTGCA GACGTGGAGA TAAGTTTAAG TAAAGCCGTG GGGTACGGTT
  Y
  AACCTTTCCC ACCGAAGGGG TTCTACTCTC TCCCTCGGCC AACATCCACT CTATGTAGGG
  GTGTCCCCAC CAACTTACCT CCAACAAAAG GCTCTTGCAG GCCATTCTGA GTCCATGAGG
  CAGATACTAC CATACAGCGT GGGTAAGCAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322844749	CHEV_8_124317299	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212557110					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122520138 () rs orientation: forward

Symbol	Name	Function Class
Rr671926	regulatory region 671926	309 bp distal
Tssr79823	transcription start site region 79823	1060 bp downstream
Tssr79824	transcription start site region 79824	927 bp downstream
Tssr79825	transcription start site region 79825	911 bp downstream
Tssr83237	transcription start site region 83237	1210 bp upstream
Tssr83238	transcription start site region 83238	1189 bp upstream
Tssr83239	transcription start site region 83239	1167 bp upstream
Tssr83240	transcription start site region 83240	1126 bp upstream
Tssr83241	transcription start site region 83241	1050 bp upstream