rs212573342 SNP Detail

Summary

• ID
  rs212573342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGTTATT GTTTGGTTGC
  TGTGAGAAAA CATCTTAACA AAAGCAACTC AGCAAAGGAA GGGTCCATTT TGGCTTGTAG
  CGTCGGGGAT ACACTCCATC CTGGAGGGGA CACATGGTGG CCAGAGGCAG CTGTACATTG
  CATGCTCAGT CAGGAAGCTA AGAGATACAC GCAGCCTCTG GGTTCTCTTT GTCCTTTTGA
  Y
  ATAGCTAGGG ATTTTGGCCC ACGGAATGTT ACTGCCCATA GGTCAGGGTG GATCTTCTTA
  CACCAAAGAA CTGAGTCCAG ATAGTCTCTC ATTCATGTTC CTATAGGCTA ACCTGACCTA
  GAAAATCCCT CACGGGCAAG CTCATAGGTT TGCCCCTAGA TGATTCTAGA GCCCGTCAGG
  GAGTCAGTCA TTAACCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408118	CHEV_17_48487442	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212573342					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655145 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1945 bp distal
Rr335234	regulatory region 335234	1144 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1700 bp downstream
Tssr145094	transcription start site region 145094	1672 bp downstream
Tssr145095	transcription start site region 145095	1624 bp downstream
Tssr145096	transcription start site region 145096	1591 bp downstream
Tssr145097	transcription start site region 145097	586 bp downstream
Tssr145098	transcription start site region 145098	244 bp downstream
Tssr145099	transcription start site region 145099	363 bp upstream
Tssr145100	transcription start site region 145100	392 bp upstream
Tssr145101	transcription start site region 145101	429 bp upstream
Tssr145102	transcription start site region 145102	528 bp upstream
Tssr148525	transcription start site region 148525	573 bp downstream