rs212573987 SNP Detail

Summary

• ID
  rs212573987
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135807262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTCCGACC GGAGCCCCAC
  CTGGGATAAC GGGTACTTCT AACCTAGAGC CTGTCCTCCG GGCGAGCGCT CCAAGAGTCC
  TTCTAGTACC GGGTTGCTAG GGGCGGTCCC AAGATTCCGC CTAATCCTGG TGACCGTCTG
  TCCTAGCGCT AGGTCCCGGA AGTGGGCAAA GCTAACGGTG GGGAGGGGCG GGGCAAGGGG
  C
  GGGGTAGGAG GCGGGGGAAG GAACGGCCTG ATAAAGTGAA GCCGGGCCTC TCTCGCGAGA
  TCTCGGAAGT GGCCGGAGCC CAGAGATGAC TTCTTTGGAG CCGGAGAGAA TCGTGACGTC
  AGGCCTCGCT CGCCGGGTCT AGGGCGTGCT AGACAAGGAA CCACACGGCC GAGCCTGTCT
  CGCGAGATTT GGCTCAAGCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss366842192	MGP_WTSI_5_136254278	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs212573987					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366842192	MGP_WTSI_5_136254278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135807262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	241 bp upstream
Rr367967	regulatory region 367967	within coordinates
Rr622430	regulatory region 622430	181 bp distal
Rr622431	regulatory region 622431	within coordinates
Rr622432	regulatory region 622432	83 bp proximal
Rr622433	regulatory region 622433	1996 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	23 bp upstream
Tssr49186	transcription start site region 49186	1772 bp downstream
Tssr49187	transcription start site region 49187	57 bp upstream
Tssr49188	transcription start site region 49188	220 bp upstream
Tssr49189	transcription start site region 49189	239 bp upstream
Tssr49190	transcription start site region 49190	266 bp upstream
Tssr49191	transcription start site region 49191	292 bp upstream
Tssr53761	transcription start site region 53761	80 bp upstream
Tssr53762	transcription start site region 53762	17 bp upstream